Creating a multi-linked dynamic dataset: a case study of plant genera named for women.

Background: A discussion on social media led to the formation of a multidisciplinary group working on this project to highlight women's contributions to science. The role of marginalised groups in science has been a topic of much discussion, but data on these contributions are largely lacking. Our motivation for the development of this dataset was not only to highlight names of plant genera that honour women, but to enrich this information with data that would allow the names, roles and lives of these women to be shared more widely with others, both researchers and data sources like Wikidata. Amplification of the contributions of women to botany through multiple means will enable the community to better recognise and celebrate the role of this particular marginalised group in the history and development of science. New information: The innovative approach of our study resulted in a dataset that is dynamic, expansive and widely shared. We have published a static dataset with this paper and have also created a dynamic dataset by linking flowering plant genera and the women in whose honour those genera were named in Wikidata. This concurrent addition of the data to Wikidata, a linked open data repository, enabled it to be enriched, queried and proactively shared during the whole process of dataset creation and into the future. This innovative workflow allowed wide, open participation throughout the research process. The methodology and workflows applied can be used to create future datasets celebrating and amplifying the contributions of marginalised groups in science.

Functional and ecological diversification of underground organs in Solanum.

The evolution of geophytes in response to different environmental stressors is poorly understood largely due to the great morphological variation in underground plant organs, which includes species with rhizomatous structures or underground storage organs (USOs). Here we compare the evolution and ecological niche patterns of different geophytic organs in Solanum L., classified based on a functional definition and using a clade-based approach with an expert-verified specimen occurrence dataset. Results from PERMANOVA and Phylogenetic ANOVAs indicate that geophytic species occupy drier areas, with rhizomatous species found in the hottest areas whereas species with USOs are restricted to cooler areas in the montane tropics. In addition, rhizomatous species appear to be adapted to fire-driven disturbance, in contrast to species with USOs that appear to be adapted to prolonged climatic disturbance such as unfavorable growing conditions due to drought and cold. We also show that the evolution of rhizome-like structures leads to changes in the relationship between range size and niche breadth. Ancestral state reconstruction shows that in Solanum rhizomatous species are evolutionarily more labile compared to species with USOs. Our results suggest that underground organs enable plants to shift their niches towards distinct extreme environmental conditions and have different evolutionary constraints.

A revision of the South American species of the Morelloid clade (Solanum L., Solanaceae).

The Morelloid clade, also known as the black nightshades or "Maurella" (Morella), is one of the 10 major clades within the mega-diverse genus Solanum L. The clade is most diverse in the central to southern Andes, but species occur around the tropics and subtropics, some extending well into the temperate zone. Plants of the group vary from herbs to short-lived perennials to perennial shrubs that are distinctly woody at the base, they have small mostly white or purplish white flowers and small juicy berries. Due to the complex morphological variation and weedy nature of these plants, coupled with the large number of published synonyms (especially for European taxa), our understanding of species limits and diversity in the Morelloid clade has lagged behind that of other clades in Solanum. Here we provide the last in a three-part series of monographic treatments of the morelloid solanums (see PhytoKeys Vols. 106, 125), treating the 62 species occurring in South America. This region is by far the most diverse in the clade, both in terms of species number and morphological diversity. We provide complete synonymy, nomenclatural details, including lecto- and neotypifications where needed, common names and uses, morphological descriptions, illustrations to aid identification both in herbaria and in the field, and distribution maps for all native, non-cultivated species. We include a key to all species, a synoptic character list for the species treated here and links to synoptic online keys for all species of the Morelloid clade. Preliminary conservation assessments following IUCN guidelines are also provided for all native species.

Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding.

Hybrid potato breeding will transform the crop from a clonally propagated tetraploid to a seed-reproducing diploid. Historical accumulation of deleterious mutations in potato genomes has hindered the development of elite inbred lines and hybrids. Utilizing a whole-genome phylogeny of 92 Solanaceae and its sister clade species, we employ an evolutionary strategy to identify deleterious mutations. The deep phylogeny reveals the genome-wide landscape of highly constrained sites, comprising ∼2.4% of the genome. Based on a diploid potato diversity panel, we infer 367,499 deleterious variants, of which 50% occur at non-coding and 15% at synonymous sites. Counterintuitively, diploid lines with relatively high homozygous deleterious burden can be better starting material for inbred-line development, despite showing less vigorous growth. Inclusion of inferred deleterious mutations increases genomic-prediction accuracy for yield by 24.7%. Our study generates insights into the genome-wide incidence and properties of deleterious mutations and their far-reaching consequences for breeding.

Fossil berries reveal global radiation of the nightshade family by the early Cenozoic.

Fossil discoveries can transform our understanding of plant diversification over time and space. Recently described fossils in many plant families have pushed their known records farther back in time, pointing to alternative scenarios for their origin and spread. Here, we describe two new Eocene fossil berries of the nightshade family (Solanaceae) from the Esmeraldas Formation in Colombia and the Green River Formation in Colorado (USA). The placement of the fossils was assessed using clustering and parsimony analyses based on 10 discrete and five continuous characters, which were also scored in 291 extant taxa. The Colombian fossil grouped with members of the tomatillo subtribe, and the Coloradan fossil aligned with the chili pepper tribe. Along with two previously reported early Eocene fossils from the tomatillo genus, these findings indicate that Solanaceae were distributed at least from southern South America to northwestern North America by the early Eocene. Together with two other recently discovered Eocene berries, these fossils demonstrate that the diverse berry clade and, in turn, the entire nightshade family, is much older and was much more widespread in the past than previously thought.

Phylogenomic discordance suggests polytomies along the backbone of the large genus Solanum.

PREMISE: Evolutionary studies require solid phylogenetic frameworks, but increased volumes of phylogenomic data have revealed incongruent topologies among gene trees in many organisms both between and within genomes. Some of these incongruences indicate polytomies that may remain impossible to resolve. Here we investigate the degree of gene-tree discordance in Solanum, one of the largest flowering plant genera that includes the cultivated potato, tomato, and eggplant, as well as 24 minor crop plants. METHODS: A densely sampled species-level phylogeny of Solanum is built using unpublished and publicly available Sanger sequences comprising 60% of all accepted species (742 spp.) and nine regions (ITS, waxy, and seven plastid markers). The robustness of this topology is tested by examining a full plastome dataset with 140 species and a nuclear target-capture dataset with 39 species of Solanum (Angiosperms353 probe set). RESULTS: While the taxonomic framework of Solanum remained stable, gene tree conflicts and discordance between phylogenetic trees generated from the target-capture and plastome datasets were observed. The latter correspond to regions with short internodal branches, and network analysis and polytomy tests suggest the backbone is composed of three polytomies found at different evolutionary depths. The strongest area of discordance, near the crown node of Solanum, could potentially represent a hard polytomy. CONCLUSIONS: We argue that incomplete lineage sorting due to rapid diversification is the most likely cause for these polytomies, and that embracing the uncertainty that underlies them is crucial to understand the evolution of large and rapidly radiating lineages.

A revision of the "spiny solanums" of Tropical Asia (Solanum, the Leptostemonum Clade, Solanaceae).

The Leptostemonum Clade, or the "spiny solanums", is the most species-rich monophyletic clade of the large cosmopolitan genus Solanum (Solanaceae) and represents almost half the species diversity of the genus. Species diversity in the clade is highest in the Americas, but significant clusters of endemic taxa occur in the Eastern Hemisphere. We present here a taxonomic revision of the 51 species of spiny solanums occurring in tropical Asia (excluding the island of New Guinea, and the lowlands of Nepal and Bhutan). Three species are described as new: Solanumkachinense X.Aubriot & S.Knapp, sp. nov. from northern Myanmar, S.peikuoense S.S.Ying, sp. nov. from Taiwan, and S.sulawesi X.Aubriot & S.Knapp, sp. nov. from northern Sulawesi, Indonesia. Of the spiny solanums occurring in the region, 38 are native and 13 are introduced from the Americas or Africa, either as adventive weeds or as cultivated plants. Phylogenetic resolution amongst these taxa is still a work in progress, so we have chosen to treat these taxa in a geographical context to aid with identification and further taxon discovery. For the native species we provide complete nomenclatural details for all recognised species and their synonyms, complete descriptions, distributions including maps, common names and uses, and preliminary conservation assessments. For the introduced taxa that have been treated in detail elsewhere we provide details of types, synonyms based on tropical Asian material, general distributions, and common names for the region. We provide lecto- or neotypifications for 67 names; 63 for native and 4 for introduced taxa. All taxa are discussed and compared to similar species; keys are provided for all taxa. We illustrate all native species with herbarium and field photographs and introduced species with field photographs only. All specimens examined for this treatment are included in Suppl. materials 1-3 as searchable files.

Monograph of Doselia (Solanaceae), a new hemiepiphytic genus endemic to the northern Andes.

A new genus, Doselia A.Orejuela & Särkinen, gen. nov., is described in the tribe Solandreae (Solanaceae) consisting of four species of hemiepiphytic lianas endemic to the premontane forests of the Colombian and Ecuadorian Andes. The genus is distinguished based on the membranous leaves, usually sparsely pubescent with eglandular simple trichomes, pseudo-verticillate leaf arrangement, and elongated, pendulous, and few-flowered inflorescences with showy flowers and conical fruits. Three new combinations are made to transfer species to the new genus previously described as part of the polyphyletic genus Markea Rich. (Doseliaepifita (S.Knapp) A.Orejuela & Särkinen, comb. nov., D.huilensis (A.Orejuela & J.M.Vélez) A.Orejuela & Särkinen, comb. nov. and D.lopezii (Hunz.) A.Orejuela & Särkinen, comb. nov.). One new species is described from the western slopes of the eastern cordillera of the Colombian Andes, known only from three localities in the Boyacá, Santander, and Tolima departments (Doseliagalilensis A.Orejuela & Villanueva, sp. nov.). The new species is unique in the genus in having glabrescent adult leaves, green-purplish calyces and long, greenish-white, infundibuliform corollas with delicate purplish veins and large lobes tinged with purple, and pubescent styles. Here we provide a revision of Doselia with a distribution map of all species, an identification key, photographs, preliminary conservation assessments, and line drawings of all four species.

ResumenUn nuevo género, Doselia A.Orejuela & Särkinen, gen. nov., es descrito en la tribu Solandreae (Solanaceae), conformado por cuatro especies de lianas hemiepífitas endémicas de los bosques premontanos de los Andes de Colombia y Ecuador. El género se distingue por sus hojas membranáceas con tricomas simples no glandulares, el arreglo pseudoverticilado de las hojas y sus inflorescencias paucifloras, largo pedunculadas y péndulas, flores vistosas y frutos cónicos. Se proponen tres nuevas combinaciones para acomodar especies previamente descritas en el polifilético género Markea Rich. (Doseliaepifita (S.Knapp) A.Orejuela & Särkinen, comb. nov., D.huilensis (A.Orejuela & J.M.Vélez) A.Orejuela & Särkinen, comb. nov. and D.lopezii (Hunz.) A.Orejuela & Särkinen, comb. nov.) Una nueva especie es descrita aquí proveniente de la vertiente occidental de la cordillera Oriental de los Andes colombianos, y conocida únicamente de tres localidades en los departamentos de Boyacá, Santander y Tolima (Doseliagalilensis A.Orejuela & Villanueva, sp. nov.). La nueva especie se caracteriza por sus hojas glabrescentes cuando adultas, cáliz verde-púrpura, corolas infundibuliformes grandes, blanco-verdosas con una reticulación fina de venas púrpuras, lóbulos corolinos grandes y teñidos de púrpura en su lado ventral y estilos pubescentes. El nuevo género es formalmente descrito incluyendo un mapa de distribución, una clave taxonómica y fotografías e ilustraciones para sus cuatro especies.

A revision of Lycianthes (Solanaceae) in Australia, New Guinea, and the Pacific.

The genus Lycianthes (Dunal) Hassl. (Solanaceae) has in the past been treated as a section of the large genus Solanum L., but is more closely related to Capsicum L. The eighteen species of Lycianthes occurring in Australia, New Guinea (defined as the island of New Guinea, comprising Papua New Guinea [incl. Bougainville] and the Indonesian provinces of Papua Barat and Papua, plus the surrounding islands connected during the last glacial maximum) and the Pacific Islands are here treated in full, with complete descriptions, including synonymy, typifications and synonyms, distribution maps and illustrations. The history of taxonomic treatment of the genus in the region is also discussed. These taxa occupy a diverse range of forested habitats, and are in diverse in habit, from small shrubs to large canopy lianas to epiphytic shrubs. They are for the most part rarely collected, and many are endemic (14 of the 18 species treated here). Australia has a single endemic Lycianthes species (L.shanesii (F.Muell.) A.R.Bean). Nine species are found in both Indonesia and Papua New Guinea, one in Indonesia only, four in Papua New Guinea only, and L.vitiensis (Seem). A.R.Bean is known from Bougainville (Papua New Guinea) and the south Pacific as far east as Samoa. Lyciantheslucens S.Knapp sp. nov. is described from the islands of Lihir, New Ireland and the Louisiade Archipelago of Papua New Guinea. The cultivated L.rantonnetii (Carrière) Bitter is also treated in full, in this region known currently only from Australia; it is native to southern South America. Preliminary conservation assessments are presented for all species except the cultivated L.rantonnetii.

Two new species of Athenaea Sendtn. (Solanaceae) from the Atlantic forests of south-eastern Brazil.

Two new species of Athenaea Sendtn. (Solanaceae) from the Brazilian Atlantic Forest are described and illustrated. Athenaea altoserranae I.M.C. Rodrigues & Stehmann, sp. nov. from the Serra do Mar range, in São Paulo State and Athenaea hunzikeriana I.M.C. Rodrigues & Stehmann, sp. nov. from a restricted area in the north-eastern region of Minas Gerais State and the southern part of Bahia State. Both species have brown to purple-brown or purple mature fruits, a character not found in other species of Athenaea. Descriptions, illustrations, complete specimen citations and maps of both species are provided. A dichotomous key to all species of Athenaea is also presented.

ResumoDuas espécies novas de Athenaea Sendtn. (Solanaceae) da floresta atlântica brasileira são descritas e ilustradas. Athenaea altoserranae I.M.C. Rodrigues & Stehmann, sp.nov. conhecida apenas da floresta atlântica da Serra do Mar, no estado de São Paulo, e Athenaea hunzikeriana I.M.C. Rodrigues & Stehmann, sp.nov., conhecida somente de uma área restrita na região nordeste do estado de Minas Gerais e sul da Bahia, divisa entre os estados. Ambas as espécies apresentam frutos amarronzados a arroxeados, um caractere até então não observado em outras espécies de Athenaea. São disponibilizadas descrições, ilustrações, citações completas de espécimes e um mapa de distribuição. Uma chave dicotômica de identificação para todas as espécies de Athenaea também é apresentada.

Botanical Monography in the Anthropocene.

Unprecedented changes in the Earth's biota are prompting urgent efforts to describe and conserve plant diversity. For centuries, botanical monographs - comprehensive systematic treatments of a family or genus - have been the gold standard for disseminating scientific information to accelerate research. The lack of a monograph compounds the risk that undiscovered species become extinct before they can be studied and conserved. Progress towards estimating the Tree of Life and digital information resources now bring even the most ambitious monographs within reach. Here, we recommend best practices to complete monographs urgently, especially for tropical plant groups under imminent threat or with expected socioeconomic benefits. We also highlight the renewed relevance and potential impact of monographies for the understanding, sustainable use, and conservation of biodiversity.

The Morelloid clade of Solanum L. (Solanaceae) in Argentina: nomenclatural changes, three new species and an updated key to all taxa.

Since the publication of the Solanaceae treatment in "Flora Argentina" in 2013 exploration in the country and resolution of outstanding nomenclatural and circumscription issues has resulted in a number of changes to the species of the Morelloid clade of Solanum L. (Solanaceae) for Argentina. Here we describe three new species: Solanum hunzikeri Chiarini & Cantero, sp. nov., from wet high elevation areas in Argentina (Catamarca, Salta and Tucumán) and Bolivia (Chuquisaca and Tarija), S. marmoratum Barboza & S. Knapp, sp. nov., from central Argentina in Catamarca, La Pampa, La Rioja, San Juan and San Luis, and S. tiinae Barboza & S. Knapp, sp. nov., from the mountains of Jujuy, La Rioja, Salta and Tucumán. We provide descriptions, illustrations and distribution maps for all new taxa. A table of nomenclatural changes and additional taxa now known to occur in Argentina summarizes additions and changes since the "Flora Argentina". We also provide an updated key, including all new taxa for the country, to facilitate identification and further exploration.

New Guinea has the world's richest island flora.

New Guinea is the world's largest tropical island and has fascinated naturalists for centuries1,2. Home to some of the best-preserved ecosystems on the planet3 and to intact ecological gradients-from mangroves to tropical alpine grasslands-that are unmatched in the Asia-Pacific region4,5, it is a globally recognized centre of biological and cultural diversity6,7. So far, however, there has been no attempt to critically catalogue the entire vascular plant diversity of New Guinea. Here we present the first, to our knowledge, expert-verified checklist of the vascular plants of mainland New Guinea and surrounding islands. Our publicly available checklist includes 13,634 species (68% endemic), 1,742 genera and 264 families-suggesting that New Guinea is the most floristically diverse island in the world. Expert knowledge is essential for building checklists in the digital era: reliance on online taxonomic resources alone would have inflated species counts by 22%. Species discovery shows no sign of levelling off, and we discuss steps to accelerate botanical research in the 'Last Unknown'8.

New names and status for Pacific spiny species of Solanum (Solanaceae, subgenus Leptostemonum Bitter; the Leptostemonum Clade).

Five new species of spiny solanums (Solanum subgenus Leptostemonum Bitter; the Leptostemonum Clade) are described from the islands of the Pacific. Two of the new species are from Fiji (S. pseudopedunculatum D.McClelland, sp. nov. and S. ratale D.McClelland, sp. nov.), two from New Caledonia (S. memoayanum D.McClelland, sp. nov. and S. semisucculentum D.McClelland, sp. nov.), one from Papua New Guinea (S. labyrinthinum D.McClelland, sp. nov.) and another from Vanuatu (S. vanuatuense D.McClelland, sp. nov.). A new status and combination is provided for the rare Hawaiian endemic S. caumii (F.Br.) D.McClelland, comb. et stat. nov. and a new type designated for S. peekelii Bitter of Papua New Guinea, for which a description is also provided. All species are illustrated with digitized herbarium specimens, mapped and have been assigned a preliminary conservation status using current IUCN guidelines. Details of all specimens examined are provided in a Suppl. materials 1: file SM1.